English/Japanese

Laboratory for Neural Circuit Theory

Publications

==Tomoki Fukai==

   [Publications]

   [Invited Lectures]

==Laboratory for Neural Cirtcuit Theory==

2017

  • NEWTakashi Handa, Takashi Takekawa, Rie Harukuni, Yoshikazu Isomura, and Tomoki Fukai. Medial frontal circuit dynamics represents probabilistic choices for unfamiliar sensory experience, Cerebral Cortex, 27:3818-3831(2017), doi:10.1093/cercor/bhx031 [Open Access]

2016

  • Miyamoto D, Hirai D, Fung CC, Inutsuka A, Odagawa M, Suzuki T, Boehringer R, Adaikkan C, Matsubara C, Matsuki N, Fukai T, McHugh TJ, Yamanaka A, Murayama M, Top-down cortical input during NREM sleep consolidates perceptual memory, Science, 2016 352, 1315-1318.
  • Naoki Hiratani, Tomoki Fukai, Hebbian Wiring Plasticity Generates Efficient Network Structures for Robust Inference with Synaptic Weight Plasticity, Frontiers in Neural Circuits, May 2016 doi: 10.3389/fncir.2016.00041 [Open Access]

2015

  • Yoshiyuki Omura, Milena M. Carvalho, Kaoru Inokuchi, and Tomoki Fukai, A lognormal recurrent network model for burst generation during hippocampal sharp waves, J Neurosci. 35:14585–14601 doi:10.1523/JNEUROSCI.4944-14.2015 [PDF]
  • Naoki Hiratani, Tomoki Fukai, Mixed Signal Learning by Spike Correlation Propagation in Feedback Inhibitory Circuits, PLoS Computational Biology, 2015 doi: 10.1371/journal.pcbi.1004227[Open Access]

2014

  • Susanne Kunkel, Maximilian Schmidt, Jochen M. Eppler, Hans E. Plesser, Gen Masumoto, Jun Igarashi, Shin Ishii, Tomoki Fukai, Abigail Morrison, Markus Diesmann and Moritz Helias, Spiking network simulation code for petascale computers, Front. Neuroinform, 2014 doi: 10.3389/fninf.2014.00078. [PDF]
  • Ryunosuke Amo, Felipe Fredes, Masae Kinoshita, Ryo Aoki, Hidenori Aizawa, Masakazu Agetsuma, Tazu Aoki, Toshiyuki Shiraki, Hisaya Kakinuma, Masaru Matsuda, Masako Yamazaki, Mikako Takahoko, Takashi Tsuboi, Shin-ichi Higashijima, Nobuhiko Miyasaka, Tetsuya Koide, Yoichi Yabuki, Yoshihiro Yoshihara, Tomoki Fukai, Hitoshi Okamoto, The Habenulo-Raphe Serotonergic Circuit Encodes an Aversive Expectation Value Essential for Adaptive Active Avoidance of Danger, Neuron. 2014 84(5):1034–1048. doi: http://dx.doi.org/10.1016/j.neuron.2014.10.035. [PDF]
  • Hiratani N, Fukai T, Interplay between short- and long-term plasticity in cell-assembly formation, PLoS One. 2014 9(7):e101535. doi: 10.1371/journal.pone.0101535. [PDF]
  • Takashi Takekawa, Keisuke Ota, Masanori Murayama and Tomoki Fukai, Spike detection from noisy neural data in linear-probe recordings, European Journal of Neuroscience, Editors Special Issue, 39(11):1943-1950, doi: 10.1111/ejn.12614. [PDF]
  • Klinshov VV, Teramae JN, Nekorkin VI, Fukai T, Dense neuron clustering explains connectivity statistics in cortical microcircuits, PLoS One. 2014 9(4):e94292. doi: 10.1371/journal.pone.0094292. [PDF]
  • Jun-nosuke Teramae and Tomoki Fukai, Computational implications of lognormally distributed synaptic weights, Proceedings of the IEEE.102(4), 500-512, doi: 10.1109/JPROC.2014.2306254. [PDF]
  • Jun-nosuke Teramae and Tomoki Fukai, Lessons From Spontaneous Neural Noise Genesis on Neuromorphic Engineering [Further Thoughts], Proceedings of the IEEE.102(4), 513, doi: 10.1109/JPROC.2014.2307019
  • Florence I. Kleberg, Tomoki Fukai and Matthieu Gilson, Excitatory and inhibitory STDP jointly tune feedforward neural circuits to selectively propagate correlated spiking activity, Front. Comput. Neurosci. doi: 10.3389/fncom.2014.00053. [PDF]
  • Tomoki Fukai, Vladimir Klinshov and Jun-nosuke Teramae, Cortical Networks with Lognormal Synaptic Connectivity and their Implications in Neuronal Avalanches, in: "Criticality in Neural Systems" (eds. Plenz D and Nieber E) Wiley, 2014.

2013

  • Nobuhiko Wagatsuma, Tobias C. Potjans, Markus Diesmann, Ko Sakai and Tomoki Fukai, Spatial and Feature-based Attention in a Layered Cortical Microcircuit Model.PLoS ONE,8(12):e80788.doi:10.1371/journal.pone.0080788. [PDF]
  • Jun Igarashi, Yoshikazu Isomura, Kensuke Arai, Rie Harukuni and Tomoki Fukai, A Theta-Gamma Oscillation Code for Neuronal Coordination during Motor Behavior.J Neurosci.33(47): 18515-18530; doi: 10.1523/JNEUROSCI.2126-13.2013. [PDF]
  • Yoshikazu Isomura, Takashi Takekawa, Rie Harukuni, Takashi Handa, Hidenori Aizawa, Masahiko Takada, and Tomoki Fukai., Reward-modulated motor information in identified striatum neurons. J Neurosci. 33:10209–10220 doi:10.1523/JNEUROSCI.0381-13.2013 [Featured Article] [PDF]
  • Aizawa H, Yanagihara S, Kobayashi M, Niisato K, Takekawa T, Harukuni R, McHugh TJ, Fukai T, Isomura Y, Okamoto H., The synchronous activity of lateral habenular neurons is essential for regulating hippocampal theta oscillation. J Neurosci. 33 :8909-21. doi:10.1523/JNEUROSCI.4369-12.2013. [PDF]
  • Yasuhiro Tsubo, Yoshikazu Isomura and Tomoki Fukai (2013) Neural Dynamics and Information Representation in Microcircuits of Motor Cortex: Frontiers in Neural Circuits[Open Access]
  • Hiratani N, Teramae J-N and Fukai T (2013) Associative memory model with long-tail-distributed Hebbian synaptic connections. Front. Comput.Neurosci. 6:102. doi: 10.3389/fncom.2012.00102[Open Access]
  • Yasuhiro Tsubo, Yoshikazu Isomura and Tomoki Fukai, Passage-time coding with a timing kernel inferred from irregular cortical spike sequences. Journal of Statistical Mechanics: Theory and Experiment, doi:10.1088/1742-5468/2013/03/P03004 (special issue: Statistical Physics and Neuroscience) [PDF]

2012

  • Moritz Helias, Susanne Kunkel, Gen Masumoto, Jun Igarashi, Jochen Martin Eppler, Shin Ishii, Tomoki Fukai, Abigail Morrison, Markus Diesmann, Supercomputers ready for use as discovery machines for neuroscience, Frontiers in Neuroinformatics,02 November 2012 | doi: 10.3389/fninf.2012.00026. [PDF]
  • Aizawa H, Kobayashi M, Tanaka S, Fukai T, Okamoto H. Molecular characterization of the subnuclei in rat habenula, J Comp Neurol. 2012 Jun 14. doi: 10.1002/cne.23167. [PDF]
  • Jun-nosuke Teramae, Yasuhiro Tsubo & Tomoki Fukai,Optimal spike-based communication in excitable networks with strong-sparse and weak-dense links, Scientific Reports,2,Article number:485, doi:10.1038/srep00485[Open Access]
  • Matthieu Gilson, Tomoki Fukai, Anthony N Burkitt, Spectral Analysis of Input Spike Trains by Spike-Timing-Dependent Plasticity, PLoS Computational Biology, e1002584.(2012)[Open Access]
  • Takashi Takekawa, Yoshikazu Isomura and Tomoki Fukai,Spike sorting of heterogeneous neuron types by multimodality-weighted PCA and explicit robust variational Bayes, Frontiers in Neuroinformatics, 6:5, doi: 10.3389/fninf.2012.00005 (2012) [PDF]
  • Y Tsubo, Y Isomura and T Fukai,Power-law inter-spike interval distributions infer a conditional maximization of entropy in cortical neurons, PLoS Computational Biology,e1002461.(2012)[Open Access]
  • Sato, YD, Okumura, K, Ichiki, A, Shiino, M, and Câteau, H,Temperature Modulated Synchronization Transition in Coupled Neuronal Oscillators, Phys. Rev. E, 85:031910-21 (2012) [PDF]

2011

  • Hiroki Kurashige and Hideyuki Câteau,Dendritic slow dynamics enables localized cortical activity to switch between mobile and immobile modes with noisy background input, PLoS ONE,6:e24007.(2011) [PDF]
  • Jun Igarashi, Osamu Shouno and Tomoki Fukai and Hiroshi Tsujino, Real-time simulation of a spiking neural network model of the basal ganglia circuitry using general purpose computing on graphics processing units. Neural Networks 24(2011),950-960 [PDF]
  • Tomohiro Fujita, Tomoki Fukai and Katsunori Kitano, Influences of Membrane Properties on Phase Response Curve and Synchronization Stability in a Model Globus Pallidus Neuron. J. Comput. Neurosci. [PDF]
  • Matthieu Gilson and Tomoki Fukai, Stability versus Neuronal Specialization for STDP: Long-Tail Weight Distributions Solve the Dilemma. PLoS ONE 6(10),e25339 [PDF]
  • Rie Kimura, Siu Kang, Naoya Takahashi, Astushi Usami, Norio Matsuki, Tomoki Fukai, and Yuji Ikegaya, Hippocampal Polysynaptic Computation. J.Neurosci 31(37):13168-13179 [PDF]
  • Wagatsuma N, Potjans TC, Diesmann M, Fukai T, Layer-dependent attentional processing by top-down signals in a visual cortical microcircuit model. Front. Comput. Neurosci. 5:31. doi: 10.3389/fncom.2011.00031[PDF]
  • Yumoto N, Lu X, Henry T, Miyachi S, Nambu A, Fukai T, Takada M, A neural correlate of the processing of multi-second time intervals in primate prefrontal cortex. PLoS ONE 6(1),e19168 [PDF]

2010

  • Fujiwara-Tsukamoto Yoko, Isomura Y, Imanishi Michiko, Ninomiya Taihei, Tsukada Minoru, Yanagawa Yuchio, Fukai T, Takada M, Prototypic seizure activity driven by mature hippocampal fast-spiking interneurons. J.Neurosci. 30(41),13679-13689 [PDF]
  • Safonov LA., Isomura Y, Kang S, Struzik ZR, Fukai T, Câteau H, Near scale-free dynamics in neural population activity of waking/sleeping rats revealed by multiscale analysis. PLoS ONE 5(9),e12869 [PDF]
  • Fukai T, Ikegaya Y, Rotter S, Editorial:Analysis and modeling of massively parallel neural signals. Neural Networks 23(6),667-668 [PDF]
  • Nakae K, Iba Y, Tsubo Y, Fukai T, Aoyagi T, Bayesian estimation of phase response curves. Neural Networks 23(6),752-763 [PDF]
  • Shinozaki T, Okada M, Reyes AD and Câteau H, Flexible traffic control of the synfire-mode transmission by inhibitory modulation:Nonlinear noise reduction. Physical Review E 81,11913 [PDF]
  • Takekawa T, Isomura Y, Fukai T, Accurate spike-sorting for multiunit recordings. European Journal of Neuroscience 31,263-272 [PDF]

2009

  • Yazaki-Sugiyama Y, Kang S, Câteau H, Fukai T, Hensch TK, Bidirectional plasticity in fast-spiking GABA circuits by visual experience. Nature 462,218-221 [PDF]
  • Isomura Y, Harukuni R, Takekawa T, Aizawa H, Fukai T, Microcircuitry coordination of cortical motor information in self-initiation of voluntary movements. Nature Neuroscience 12,1586-1593 [PDF]
  • Takekawa T, Fukai T, A novel view of the variational Bayesian clustering. Neurocomputing 72,3366-3369 [PDF]
  • Okamoto H, Fukai T., Recurrent network models for perfect temporal integration of fluctuating correlated inputs. PLoS Comput. Biol. 5(6),e1000404 [PDF]
  • Teramae J, Nakao H, and Ermentrout GB, Stochastic phase reduction for a general class of noisy limit cycle oscillators. Physical Review Letters 102,194102 [PDF]

Other selected publications

  • Sakai Y, Fukai T (2008) When does reward maximization lead to matching law? PLoS ONE 3(11),e3795 [PDF]
  • Sakai Y, Fukai T (2007) The actor-critic learning is behind the matching law: Matching versus optimal behaviors. Neural Computation 20,227-251 [PDF]
  • Teramae J, Fukai T (2007) Local cortical circuit model inferred from power-law distributed neuronal avalanches. J. Comput. Neurosci. 22,301-312 [PDF]
  • Miura K, Tsubo Y, Okada M, Fukai T (2007) Balanced excitatory and inhibitory inputs to cortical neurons decouple firing irregularity from rate modulations. J. Neurosci. 27,13802-13812 [PDF]
  • Teramae J, Fukai T (2005) A cellular mechanism for graded persistent activity in a model neuron and its implications in working memory. Journal of Computational Neuroscience 18,105-121 [PDF]
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Lab. for Neural Circuit Theory, RIKEN Brain Science Institute
2-1 Hirosawa, Wako, Saitama, 351-0198 JAPAN