English/Japanese

Laboratory for Neural Coding and Brain Computing

Publications

==Tomoki Fukai==

   [Publications]

   [Invited Lectures]

==Laboratory for Neural Coding and Brain Computing==

2018

  • NEWToshitake Asabuki, Naoki Hiratani and Tomoki Fukai (2018) Interactive reservoir computing for chunking information streams. PLoS Comput Biol, 14(10):e1006400, doi:10.1371/journal.pcbi.1006400 [Open Access]
  • NEWTatsuya Haga and Tomoki Fukai (2018) Dendritic processing of spontaneous neuronal sequences for single-trial learning. Sci Rep, 8:15166, doi:10.1038/s41598-018-33513-9 [Open Access]
  • Naoki Hiratani and Tomoki Fukai (2018) Redundancy in synaptic connections enables neurons to learn optimally. PNAS, 115(29): E6871-E6879, doi:10.1073/pnas.1803274115 [Link][Link]
  • Chi Chung Alan Fung and Tomoki Fukai (2018) Transient and persistent up states during slow-wave oscillation and their implications for cell-assembly variability. Sci Rep, 8(1):10680, doi:10.1038/s41598-018-28973-y [Open Access]
  • Tatsuya Haga and Tomoki Fukai (2018) Recurrent network model for learning goal-directed sequences through reverse replay. Elife, 7:e34171, doi:10.7554/eLife.34171 [eLife]
  • Gonzalo Martín-Vázquez, Toshitake Asabuki, Yoshikazu Isomura and Tomoki Fukai (2018) Learning task-related activities from independent local-field-potential components across motor cortex layers, Front Neurosci, 12:429. doi:10.3389/fnins.2018.00429 [Open Access]

2017

  • Naoki Hiratani and Tomoki Fukai (2017) Detailed dendritic excitatory/inhibitory balance through heterosynaptic spike-timing-dependent plasticity. J Neurosci, 37 (50): 12106-12122, doi:10.1523/JNEUROSCI.0027-17.2017
  • Naoki Hiratani and Tomoki Fukai (2017) Selection of synaptic connections by wiring plasticity for robust learning by synaptic weight plasticity. In:The rewiring brain (eds. Arjen van Ooyen and Markus Butz-Ostendorf ) 275–292, Academic Press
  • Robert E Kass, Shun-Ichi Amari, Kensuke Arai, Emery N Brown, Casey O Diekman, Markus Diesmann, Brent Doiron, Uri T Eden, Adrienne L Fairhall, Grant M Fiddyment, Tomoki Fukai, Sonja Grün, Matthew T Harrison, Moritz Helias, Hiroyuki Nakahara, Jun-nosuke Teramae, Peter J Thomas, Mark Reimers, Jordan Rodu, Horacio G Rotstein, Eric Shea-Brown, Hideaki Shimazaki, Shigeru Shinomoto, Byron M Yu and Mark A Kramer (2017) Computational neuroscience: Mathematical and statistical perspectives. Annu Rev Stat Appl, 5:183-214,doi:10.1146/annurev-statistics-041715-033733
  • Takashi Handa, Takashi Takekawa, Rie Harukuni, Yoshikazu Isomura and Tomoki Fukai (2017) Medial frontal circuit dynamics represents probabilistic choices for unfamiliar sensory experience. Cerebr Cortex, 27(7):3818-3831, doi: 10.1093/cercor/bhx031 [Open Access]

2016

  • Daisuke Miyamoto, Daichi Hirai, Chi Chung Fung, Ayumu Inutsuka, Maya Odagawa, Takayuki Suzuki, Roman Boehringer, Chinnakkaruppan Adaikkan, Chie Matsubara, Norio Matsuki, Tomoki Fukai, Thomas J McHugh, Akihiro Yamanaka and Masanori Murayama (2016) Top-down cortical input during NREM sleep consolidates perceptual memory. Science, 352(6291):1315-1318, doi: 10.1126/science.aaf0902
  • Naoki Hiratani and Tomoki Fukai (2016) Hebbian wiring plasticity generates efficient network structures for robust inference with synaptic weight plasticity. Front Neural Circuits, 10(41) : 1-19, doi: 10.3389/fncir.2016.00041 [Open Access]

2015

  • Yoshiyuki Omura, Milena M Carvalho, Kaoru Inokuchi and Tomoki Fukai (2015) A lognormal recurrent network model for burst generation during hippocampal sharp waves. J Neurosci, 35(43):14585-14601, doi: 10.1523/JNEUROSCI.4944-14.2015 [PDF]
  • Naoki Hiratani and Tomoki Fukai (2015) Mixed signal learning by spike correlation propagation in feedback inhibitory circuits. PLoS Comput Biol, 11(4): e1004227, 1-36, doi: 10.1371/journal.pcbi.1004227 [Open Access]

2014

  • Ryunosuke Amo, Felipe Fredes, Masae Kinoshita, Ryo Aoki, Hidenori Aizawa, Masakazu Agetsuma, Tazu Aoki, Toshiyuki Shiraki, Hisaya Kakinuma, Masaru Matsuda, Masako Yamazaki, Mikako Takahoko, Takashi Tsuboi, Shin-ichi Higashijima, Nobuhiko Miyasaka, Tetsuya Koide, Yoichi Yabuki, Yoshihiro Yoshihara, Tomoki Fukai and Hitoshi Okamoto (2014) The habenulo-raphe serotonergic circuit encodes an aversive expectation value essential for adaptive active avoidance of danger. Neuron 84:1034-1048, doi: 10.1016/j.neuron.2014.10.035 [PDF]
  • Susanne Kunkel, Maximilian Schmidt, Jochen M Eppler, Hans E Plesser, Gen Masumoto, Jun Igarashi, Shin Ishii, Tomoki Fukai, Abigail Morrison, Markus Diesmann and Moritz Helias (2014) Spiking network simulation code for petascale computers. Front Neuroinform, 8(78): 1-23, doi: 10.3389/fninf.2014.00078 [PDF]
  • Naoki Hiratani and Tomoki Fukai (2014) Interplay between short- and long-term plasticity in cell-assembly formation. PLoS One, 9(7):e101535, 1-16, doi: 10.1371/journal.pone.0101535 [PDF]
  • Takashi Takekawa, Keisuke Ota, Masanori Murayama and Tomoki Fukai (2014) Spike detection from noisy neural data in linear-probe recordings. Eur J Neurosci, 39: 1943-1950, doi:10.1111/ejn.12614 [PDF]
  • Florence I Kleberg, Tomoki Fukai and Matthieu Gilson (2014) Excitatory and inhibitory STDP jointly tune feedforward neural circuits to selectively propagate correlated spiking activity. Front Comput Neurosci. 8(53):1-15, doi: 10.3389/fncom.2014.00053 [PDF]
  • Vladimir V Klinshov, Jun-nosuke Teramae, Vladimir I Nekorkin and Tomoki Fukai (2014) Dense neuron clustering explains connectivity statistics in cortical microcircuits. PLoS One, 9(4):e94292, 1-12, doi: 10.1371/journal.pone.0094292 [PDF]
  • Tomoki Fukai and Jun-nosuke Teramae (2014) Lessons from spontaneous neural noise genesis on neuromorphic engineering. Proc IEEE, 102(4):513, doi: 10.1109/JPROC.2014.2307019
  • Jun-nosuke Teramae and Tomoki Fukai (2014) Computational implications of lognormally distributed synaptic weights. Proc IEEE, 102(4):500-512, doi: 10.1109/JPROC.2014.2306254 [PDF]
  • Tomoki Fukai, Vladimir Klinshov and Jun-nosuke Teramae, Cortical Networks with Lognormal Synaptic Connectivity and their Implications in Neuronal Avalanches, in: "Criticality in Neural Systems" (eds. Plenz D and Nieber E) Wiley, 2014.

2013

  • Nobuhiko Wagatsuma, Tobias C Potjans, Markus Diesmann, Ko Sakai and Tomoki Fukai (2013) Spatial and feature-based attention in a layered cortical microcircuit model. PLOS One, 8(12): e80788,1-14, doi: 10.1371/journal.pone.0080788 [PDF]
  • Jun Igarashi, Yoshikazu Isomura, Kensuke Arai, Rie Harukuni and Tomoki Fukai (2013) A θ-γ oscillation code for neuronal coordination during motor behavior. J Neurosci, 33(47):18515-18530. doi: 10.1523/JNEUROSCI.2126-13.2013 [PDF]
  • Yoshikazu Isomura, Takashi Takekawa, Rie Harukuni, Takashi Handa, Hidenori Aizawa, Masahiko Takada, and Tomoki Fukai (2013) Reward-modulated motor information in identified striatum neurons. J Neurosci, 33(25):10209-10220, doi: 10.1523/JNEUROSCI.0381-13.2013 [Featured Article] [PDF]
  • Hidenori Aizawa, Shin Yanagihara, Megumi Kobayashi, Kazue Niisato, Takashi Takekawa, Rie Harukuni, Thomas J McHugh, Tomoki Fukai, Yoshikazu Isomura and Hitoshi Okamoto (2013) The synchronous activity of lateral habenular neurons is essential for regulating hippocampal theta oscillation. J Neurosci, 33(20): 8909- -8921, doi: 10.1523/JNEUROSCI.4369-12.2013 [PDF]
  • Yasuhiro Tsubo, Yoshikazu Isomura and Tomoki Fukai (2013) Neural dynamics and information representation in microcircuits of motor cortex. Front Neural Circuits, 7(85):1-10, doi: 10.3389/fncir.2013.00085 [Open Access]
  • Yasuhiro Tsubo, Yoshikazu Isomura and Tomoki Fukai (2013) Passage-time coding with a timing kernel inferred from irregular cortical spike sequences. J Stat Mech, P03004: 1-21. doi:10.1088/1742-5468/2013/03/P03004 (special issue: Statistical Physics and Neuroscience) [PDF]
  • Naoki Hiratani, Jun-nosuke Teramae and Tomoki Fukai (2013) Associative memory model with long-tail-distributed Hebbian synaptic connections. Front Comput Neurosci, 6(102):1-15, doi:10.3389/fncom.2012.00102 [Open Access]

2012

  • Hidenori Aizawa, Megumi Kobayashi, Sayaka Tanaka, Tomoki Fukai and Hitoshi Okamoto (2012) Molecular characterization of the subnuclei in rat habenula. J Comp Neurol, 520(18):4051-66, doi: 10.1002/cne.23167 [PDF]
  • Moritz Helias, Susanne Kunkel, Gen Masumoto, Jun Igarashi, Jochen Martin Eppler, Shin Ishii, Tomoki Fukai, Abigail Morrison and Markus Diesmann (2012) Supercomputers ready for use as discovery machines for neuroscience. Front Neuroinform, 6 (26):1-12, doi: 10.3389/fninf.2012.00026 [PDF]
  • Matthieu Gilson, Tomoki Fukai and Anthony N Burkitt (2012) Spectral analysis of input spike trains by spike-timing-dependent plasticity. PLoS Comput Biol, 8(7): e1002584-1-22, doi: 10.1371/journal.pcbi.1002584 [Open Access]
  • Jun-nosuke Teramae, Yasuhiro Tsubo and Tomoki Fukai (2012) Optimal spike-based communication in excitable networks with strong-sparse and weak-dense links. Sci Rep, 2(485):1-6, doi:10.1038/srep00485 [Open Access]
  • Takashi Takekawa, Yoshikazu Isomura and Tomoki Fukai (2012) Spike sorting of heterogeneous neuron types by multimodality-weighted PCA and explicit robust variational Bayes. Front Neuroinform, 6(5):1-13, doi: 10.3389/fninf.2012.00005 [PDF]
  • Yasuhiro Tsubo, Yoshikazu Isomura and Tomoki Fukai (2012) Power-law inter-spike interval distributions infer a conditional maximization of entropy in cortical neurons. PLoS Comput Biol, 8(4):e1002461,1-11, doi: 10.1371/journal.pcbi.1002461 [Open Access]
  • Yasuomi D Sato, Keiji Okumura, Akihisa Ichiki, Masatoshi Shiino and Hideyuki Câteau (2012) Temperature modulated synchronization transition in coupled neuronal oscillators. Phys Rev E, 85:031910-21, doi:10.1103/PhysRevE.85.031910 [PDF]

2011

  • Hiroki Kurashige and Hideyuki Câteau (2011) Dendritic slow dynamics enables localized cortical activity to switch between mobile and immobile modes with noisy background input. PLoS ONE,6:e24007, doi:10.1371/journal.pone.0024007 [PDF]
  • Jun Igarashi, Osamu Shouno, Tomoki Fukai and Hiroshi Tsujino (2011) Real-time simulation of a spiking neural network model of the basal ganglia circuitry using general purpose computing on graphics processing units. Neural Netw, 24(9):950–960, doi: 10.1016/j.neunet.2011.06.008 [PDF]
  • Tomohiro Fujita, Tomoki Fukai and Katsunori Kitano (2011) Influences of membrane properties on phase response curve and synchronization stability in a model globus pallidus neuron. J Comput Neurosci, 32(3):539-553, doi: 10.1007/s10827-011-0368-2 [PDF]
  • Matthieu Gilson and Tomoki Fukai (2011) Stability versus neuronal specialization for STDP: long-tail weight distributions solve the dilemma. PLoS One, 6(10): e25339,1-18, doi: 10.1371/journal.pone.0025339 [PDF]
  • Rie Kimura, Siu Kang, Naoya Takahashi, Atsushi Usami, Norio Matsuki, Tomoki Fukai and Yuji Ikegaya (2011) Hippocampal polysynaptic computation. J Neurosci, 31(37): 13168-13179, doi:10.1523/JNEUROSCI.1920-11.2011 [PDF]
  • Nobuhiko Wagatsuma, Tobias C Potjans, Markus Diesmann and Tomoki Fukai (2011) Layer-dependent attentional processing by top-down signals in a visual cortical microcircuit model. Front Comput Neurosci, 5:31, doi: 10.3389/fncom.2011.00031 [PDF]
  • Naosugi Yumoto, Xiaofeng Lu, Thomas R Henry, Shigehiro Miyachi, Atsushi Nambu, Tomoki Fukai and Masahiko Takada (2011) A neural correlate of the processing of multi-second time intervals in primate prefrontal cortex. PLoS One, 6 (4): e19168, 1-7, doi: 10.1371/journal.pone.0019168 [PDF]

2010

  • Yoko Fujiwara-Tsukamoto, Yoshikazu Isomura, Michiko Imanishi, Taihei Ninomiya, Minoru Tsukada, Yuchio Yanagawa, Tomoki Fukai and Masahiko Takada (2010) Prototypic seizure activity driven by mature hippocampal fast-spiking interneurons. J Neurosci, 30(41): 13679-13689, doi:10.1523/JNEUROSCI.1523-10.2010 [PDF]
  • Leonid A Safonov, Yoshikazu Isomura, Siu Kang, Zbigniew R Struzik, Tomoki Fukai and Hideyuki Câteau (2010) Near scale-free dynamics in neural population activity of waking/sleeping rats revealed by multiscale analysis. PLoS One, 5(9): e12869, 1-11, doi: 10.1371/journal.pone.0012869 [PDF]
  • Tomoki Fukai, Yuji Ikegaya and Stefan Rotter (2010) Editorial:Analysis and modeling of massively parallel neural signals. Neural Netw, 23(6):667-668, doi:10.1016/j.neunet.2010.05.010 [PDF]
  • Ken Nakae, Yukito Iba, Yasuhiro Tsubo, Tomoki Fukai and Toshio Aoyagi (2010) Bayesian estimation of phase response curves. Neural Netw, 23(6):752-763, doi: 10.1016/j.neunet.2010.04.002 [PDF]
  • Takashi Sinozaki, Masato Okada, Alex D Reyes and Hideyuki Câteau (2010) Flexible traffic control of the synfire-mode transmission by inhibitory modulation:Nonlinear noise reduction. Phys Rev E 81,11913 doi:10.1103/PhysRevE.81.011913 [PDF]
  • Takashi Takekawa, Yoshikazu Isomura and Tomoki Fukai (2010) Accurate spike-sorting for multiunit recordings. Eur J Neurosci, 31(2):263-272, doi:10.1111/j.1460-9568.2009.07068.x [PDF]

2009

  • Yoko Yazaki-Sugiyama, Siu Kang, Hideyuki Câteau, Tomoki Fukai and Takao K Hensch (2009) Bidirectional plasticity in fast-spiking GABA circuits by visual experience. Nature, 462:218-221, doi:10.1038/nature08485 [PDF]
  • Yoshikazu Isomura, Rie Harukuni, Takashi Takekawa, Hidenori Aizawa and Tomoki Fukai (2009) Microcircuitry coordination of cortical motor information in self-initiation of voluntary movements. Nat Neurosci, 12:1586-1593, doi:10.1038/nn.2431 [PDF]
  • Takashi Takekawa and Tomoki Fukai (2009) A novel view of the variational Bayesian clustering. Neurocomputing, 72(13-15):3366-3369, doi: 10.1016/j.neucom.2009.04.003 [PDF]
  • Hiroshi Okamoto and Tomoki Fukai (2009) Recurrent network models for perfect temporal integration of fluctuating correlated inputs. PLoS Comput Biol, 5(6): e1000404, 1-10, doi: 10.1371/journal.pcbi.1000404 [PDF]
  • Jun-nosuke Teramae, Hiroya Nakao and G Bard Ermentrout (2009) Stochastic phase reduction for a general class of noisy limit cycle oscillators. Phys Rev Lett, 102,194102 doi:10.1103/PhysRevLett.102.194102 [PDF]

Other selected publications

  • Yutaka Sakai and Tomoki Fukai (2008) When does reward maximization lead to matching law? PLoS One, 3(11): e3795, 1-7, doi: 10.1371/journal.pone.0003795 [PDF]
  • Yutaka Sakai and Tomoki Fukai (2008) The actor-critic learning is behind the matching law: Matching versus optimal behaviors. Neural Comput, 20: 227-251, doi:10.1162/neco.2008.20.1.227 [PDF]
  • Jun-nosuke Teramae and Tomoki Fukai (2007) Local cortical circuit model inferred from power-law distributed neuronal avalanches. J Comput Neurosci, 22:301-312, doi: 10.1007/s10827-006-0014-6 [PDF]
  • Keiji Miura, Yasuhiro Tsubo, Masato Okada and Tomoki Fukai (2007) Balanced excitatory and inhibitory inputs to cortical neurons decouple firing irregularity from rate modulations. J Neurosci. 27:13802-13812, doi: 10.1523/JNEUROSCI.2452-07.2007 [PDF]
  • Jun-nosuke Teramae and Tomoki Fukai (2005) A cellular mechanism for graded persistent activity in a model neuron and its implications in working memory. J Comput Neurosci, 18: 105-121,doi:10.1007/s10827-005-5474-6 [PDF]
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Lab. for Neural Coding and Brain Computing, RIKEN CBS
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